From dd19201605dbd4ea386739a1ddfa0592369e2f8c Mon Sep 17 00:00:00 2001
From: David Runge <david.runge@frqrec.com>
Date: Thu, 22 May 2014 01:29:09 +0200
Subject: Retab of document

---
 SNP.sc | 98 +++++++++++++++++++++++++++++++++---------------------------------
 1 file changed, 49 insertions(+), 49 deletions(-)

diff --git a/SNP.sc b/SNP.sc
index 5249971..da297da 100644
--- a/SNP.sc
+++ b/SNP.sc
@@ -1,54 +1,54 @@
 SNP{//TODO: use vectorial represntations only, strip chromosome (redundant, as stored in SNPDict already), 
-	var <chromosome;//chromosome as Symbol
-	var <vecChromosome;//corresponding number
-	var <id;//rsid of the SNP
-	var <position;//position of SNP on own chromosome
-	var <base;//base of the SNP (single or pair)
-	var <vecBase;//vectorial representation of the base (pair)
-	var <>resolver;//the other (two) combination(s) of the position
-	var <vecResolver;//vectorial representation of the other combination(s)
+  var <chromosome;//chromosome as Symbol
+  var <vecChromosome;//corresponding number
+  var <id;//rsid of the SNP
+  var <position;//position of SNP on own chromosome
+  var <base;//base of the SNP (single or pair)
+  var <vecBase;//vectorial representation of the base (pair)
+  var <>resolver;//the other (two) combination(s) of the position
+  var <vecResolver;//vectorial representation of the other combination(s)
 
-	*new{
-		arg aChromosome, aPosition = 0, aId, aBase, aResolver;
-		^super.new.init(aChromosome, aPosition, aId, aBase, aResolver);
-	}
+  *new{
+    arg aChromosome, aPosition = 0, aId, aBase, aResolver;
+    ^super.new.init(aChromosome, aPosition, aId, aBase, aResolver);
+  }
 
-	init{
-		arg aChromosome, aPosition, aId, aBase, aResolver;
-		chromosome = aChromosome.asSymbol;
-		vecChromosome = SNPInfo.convertChromosome(chromosome);
-		position = aPosition.asFloat;
-		id = aId.asSymbol;
-		base = aBase.asSymbol;
-		resolver = aResolver.asArray;
-		vecBase = SNPInfo.baseToVec(base);
-		vecResolver = SNPInfo.baseToVec(resolver);
-	}
-	
-	hasResolver{//check if this SNP has a resolver
-		var resolved = true;
-		if(resolver.isArray,{
-			resolver.do({
-				arg item,i;
-				if(item==\none,{
-					resolved = false
-				});
-			});
-			^resolved;
-		},{
-			if(resolver!=\none,{
-				^true;
-			},{
-				^false;
-			});
-		});
-	}
+  init{
+    arg aChromosome, aPosition, aId, aBase, aResolver;
+    chromosome = aChromosome.asSymbol;
+    vecChromosome = SNPInfo.convertChromosome(chromosome);
+    position = aPosition.asFloat;
+    id = aId.asSymbol;
+    base = aBase.asSymbol;
+    resolver = aResolver.asArray;
+    vecBase = SNPInfo.baseToVec(base);
+    vecResolver = SNPInfo.baseToVec(resolver);
+  }
 
-	updateResolver{//update a resolver and its vector representation
-		arg newResolver;
-		if(newResolver!=resolver,{
-			resolver = newResolver;
-			vecResolver = SNPInfo.baseToVec(resolver);
-		});
-	}
+  hasResolver{//check if this SNP has a resolver
+    var resolved = true;
+    if(resolver.isArray,{
+      resolver.do({
+        arg item,i;
+        if(item==\none,{
+          resolved = false
+        });
+      });
+      ^resolved;
+    },{
+      if(resolver!=\none,{
+        ^true;
+      },{
+        ^false;
+      });
+    });
+  }
+
+  updateResolver{//update a resolver and its vector representation
+    arg newResolver;
+    if(newResolver!=resolver,{
+      resolver = newResolver;
+      vecResolver = SNPInfo.baseToVec(resolver);
+    });
+  }
 }
-- 
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